MAGETAB and SDRF for Proteomics

MAGETAB and SDRF for Proteomics in DocProc [handling editor: Sylvie Ricard-Blum]

A specification document for a sample metadata annotation of proteomics experiments has been submitted to the PSI document process.

This document provides information to the proteomics community about a proposed standard for sample metadata annotations (for instance, to be used in public repositories) called Sample and Data Relationship File (SDRF), as part of the MAGE-TAB Proteomics format.

After having passed a 30-day review of the PSI steering group with subsequent changes, the revised document version 1.0 DRAFT now goes through 60-day public comments and external review phase until June 30th, 2021.

Specification document: HUPO_PSI_MAGETAB_Proteomics_1.0_Draft.docx

Use case examples and development background: further information, including any updates to this document, implementations, and examples is available at https://github.com/bigbio/proteomics-metadata-standard.

Please send comments by e-mail directly to sylvie.ricard-blum at univ-lyon1.fr

for example regarding the following criteria:

- That the specification is presented in accordance with the templates and is clearly written.

 - That it is sufficiently detailed and comprehensively describes the necessary and sufficient explanation of the specification.

 

If you do not feel experienced enough to comment on this document, but know colleagues who are, please consider forwarding this request to them.

There is no requirement that people commenting should have had any prior contact with the PSI.

Thank you very much in advance for your valuable time and participation

 

Sylvie RICARD-BLUM - PSI Editor