Molecular Interactions



The Minimum Information About a Bioactive Entity


The Minimum Information About a Bioactive Entity

 MIABE


Development of standards-compliant tools for molecular interaction data management

2008-11-16 13:00
2008-11-19 15:00
Etc/GMT


The outcome of this meeting was published here.

Abstract


TRAINING DAY

Back to the PSI-PAR (Protein Affinity Reagents) main page

 

Training day for Protein Affinity Reagent data representation

in the PSI-PAR format

 

 

2 June 2008 in the EBI IT training suite

 

Objectives

1. To provide training in the use of the MI XML2.5 exchange format to represent protein affinity reagent data.


Molecular Interactions Workgroup

The Molecular Interactions workgroup is concentrating on:

  • improving the annotation and representation of molecular interaction data wherever it is published, be this in journal articles, authors web-sites or public domain databases
  • improving the accessibility of molecular interaction data to the user community. By using a common standard data can be downloaded from multiple sources and easily combined using a single parser

To this end we have developed :

Minimum Requirements Standards

  • MIMIx - the Minimum Information about a Molecular Interaction experiment guidelines to assist the scientist in reporting and submitting interaction data and in manuscript preparation (Full text)


Molecular Interaction XML Format Documentation

Proteomics Standards Initiative

Molecular Interaction XML Format Documentation

Version 2.5

Released December 5, 2005

Last maintenance update
June 1, 2006,
to version 2.5.3

 


Molecular Interaction XML Format: schema changes from version 1.0 to 2.5

HUPO Proteomics Standards Initiative Protein Interaction Specification Documentation


PSI Proteomics Standards Initiative Version 1.0

HUPO Proteomics Standards Initiative Protein Interaction Specification Documentation

Proteomics Standards Initiative

Molecular Interaction XML Format Documentation

Version 1.0

Introduction

The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification.

The Proteomics Standards Initiative was founded at the HUPO meeting in Washington, April 28-29, 2002 (see Science296, 827). As a first step, the PSI is developing standards for two key areas of proteomics: mass spectrometry and protein-protein interaction data.


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